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Monday, April 5, 2021

Emerging SARS-CoV-2 mutant evading cellular immunity and increasing viral infectivity

 Chihiro Motozono, Mako Toyoda, Jiri Zahradnik, 

Terumasa IkedaAkatsuki SaitoToong Seng TanIsaac NgareHesham NasserIzumi KimuraKeiya UriuYusuke KosugiShiho ToriiAkiko YonekawaNobuyuki ShimonoYoji NagasakiRumi MinamiTakashi ToyaNoritaka SekiyaTakasuke FukuharaYoshiharu MatsuuraGideon SchreiberThe Genotype to Phenotype Japan (G2P-Japan) consortiumSo NakagawaTakamasa UenoKei Sato

Driving potent neutralization of a SARS-CoV-2 Variant of Concern with a heterotypic boost

 Daniel J Sheward, Marco Mandolesi, Changil Kim, Leo Hanke, Laura Perez Vidakovics, Gerald M McInerney, Gunilla Karlsson Hedestam, Ben Murrell

Exhaled aerosol increases with COVID-19 infection, age, and obesity

 David A. Edwards, Dennis Ausiello, Jonathan Salzman, Tom Devlin, 

 See all authors and affiliations

DOI: 

PDF: https://www.pnas.org/content/pnas/118/8/e2021830118.full.pdf

Significance

Superspreading events have distinguished the COVID-19 pandemic from the early outbreak of the disease. Our studies of exhaled aerosol suggest that a critical factor in these and other transmission events is the propensity of certain individuals to exhale large numbers of small respiratory droplets. Our findings indicate that the capacity of airway lining mucus to resist breakup on breathing varies significantly between individuals, with a trend to increasing with the advance of COVID-19 infection and body mass index multiplied by age (i.e., BMI-years). Understanding the source and variance of respiratory droplet generation, and controlling it via the stabilization of airway lining mucus surfaces, may lead to effective approaches to reducing COVID-19 infection and transmission.

Abstract

COVID-19 transmits by droplets generated from surfaces of airway mucus during processes of respiration within hosts infected by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus. We studied respiratory droplet generation and exhalation in human and nonhuman primate subjects with and without COVID-19 infection to explore whether SARS-CoV-2 infection, and other changes in physiological state, translate into observable evolution of numbers and sizes of exhaled respiratory droplets in healthy and diseased subjects. In our observational cohort study of the exhaled breath particles of 194 healthy human subjects, and in our experimental infection study of eight nonhuman primates infected, by aerosol, with SARS-CoV-2, we found that exhaled aerosol particles vary between subjects by three orders of magnitude, with exhaled respiratory droplet number increasing with degree of COVID-19 infection and elevated BMI-years. We observed that 18% of human subjects (35) accounted for 80% of the exhaled bioaerosol of the group (194), reflecting a superspreader distribution of bioaerosol analogous to a classical 20:80 superspreader of infection distribution. These findings suggest that quantitative assessment and control of exhaled aerosol may be critical to slowing the airborne spread of COVID-19 in the absence of an effective and widely disseminated vaccine.

https://www.pnas.org/content/118/8/e2021830118

Incidence of 30-Day Venous Thromboembolism in Adults Tested for SARS-CoV-2 Infection

 Nareg H. Roubinian, MD1,2,3Jennifer R. Dusendang, MPH1Dustin G. Mark, MD1,2et al

 doi:10.1001/jamainternmed.2021.0488

Hospitalization for COVID-19 is associated with high rates of venous thromboembolism (VTE).1 Whether SARS-CoV-2 infection affects the risk of VTE outside of the hospital setting remains poorly understood. We report on the 30-day incidence of outpatient and hospital-associated VTE following SARS-CoV-2 testing among adult members of the Kaiser Permanente Northern California health plan.

Methods

We performed a retrospective cohort study of 220 588 adult members of the Kaiser Permanente Northern California health plan who were tested for SARS-CoV-2 by polymerase chain reaction from February 25 through August 31, 2020. For participants with multiple SARS-CoV-2 tests, the index date was the first test date with a positive result or the first test date with a negative result if all tests were negative. We characterized study participants by demographic information, comorbidities, testing location, and level of care, excluding participants who were asymptomatic at the time of testing or had received anticoagulation in the prior year. We assessed incidence and timing of 30-day VTE using diagnosis codes, new anticoagulant prescriptions, and VTE encounters with a centralized anticoagulation management service.2 We identified inpatient anticoagulation based on consecutive-day administration of VTE treatment dosing of oral, intravenous, or subcutaneous anticoagulants. We defined VTE as outpatient events when diagnosed in outpatient or emergency department settings and as hospital-associated events when diagnosed during or after hospitalization. The Kaiser Permanente Northern California institutional review board approved the study and waived informed consent according to the Common Rule. Analyses were performed using SAS, version 9.4 (SAS Institute Inc); 2-sided χ2 and Kruskal-Wallis tests with P < .05 were considered to be statistically significant.

Results

Of the 220 588 patients with symptoms who were tested for SARS-CoV-2 (mean [SD] age, 47.1 [17.3] years; 131 075 [59.4%] women), 26 104 (11.8%) had a positive result (Table 1). Within 30 days of testing, a VTE was diagnosed in 198 (0.8%) of the patients with a positive SARS-CoV-2 result and 1008 (0.5%) of patients with a negative result (P < .001). Viral testing took place in an outpatient setting for most of the patients (117 of 198; 59.1%) who had a positive SARS-CoV-2 test result and later developed VTE. Of these 117 patients, 89 (76.1%) required subsequent hospitalization. Among those patients who underwent outpatient viral testing, 30-day VTE incidence was higher among those with a positive SARS-CoV-2 result than among those with a negative result (4.7 vs 1.6 cases per 1000 individuals tested; P < .001). Compared with patients with a negative SARS-CoV-2 test result, those with a positive result had a higher 30-day incidence of hospital-associated (5.8 vs 3.0 cases per 1000 individuals tested; P < .001) but not outpatient VTE (1.8 vs 2.2 cases per 1000 tested; P = .16; Table 2). Posthospital VTE occurred with similar frequency among participants with positive and negative SARS-CoV-2 test results (1.0 vs 1.1 cases per 1000 tested; P = .51). In patients with a positive result, the median (interquartile range) number of days (11 [4-21] vs 11 [1-25]; P = .67) from viral testing to anticoagulation was comparable for outpatient and posthospital VTE.

Discussion

The incidence of outpatient VTE among symptomatic patients with positive SARS-CoV-2 test results was similar to that of patients with negative results. In parallel to recent reports, posthospital VTE incidence did not differ by SARS-CoV-2 status and was comparable with that seen in clinical trials of thromboprophylaxis.3,4 A VTE is a potentially preventable complication of SARS-CoV-2 infection, especially in outpatients with risk factors for thrombosis or severe COVID-19. Ongoing randomized clinical trials will determine whether the risks and benefits of prophylactic anticoagulation in outpatients with COVID-19 will improve clinical outcomes.5 Recognizing that the timing of outpatient VTE paralleled that of posthospital events, the 30-day duration of outpatient thromboprophylaxis proposed in clinical trials may be sufficient to mitigate virally mediated thromboinflammation.6

Limitations of VTE diagnosis include changes in diagnostic testing patterns because of possible infection transmission or recognition of VTE risk with SARS-CoV-2, as well as increased use of empirical anticoagulation and/or anti-inflammatory agents. Our approach to case identification may have missed VTE; however, incidence in hospitalized patients paralleled that identified using natural language processing methods.1 Lastly, outpatient VTE burden may have been underestimated if diagnostic imaging occurred shortly after hospitalization.

These findings suggest that VTE incidence outside of the hospital is not significantly increased with SARS-CoV-2 infection and argue against the routine use of outpatient thromboprophylaxis outside of clinical trials. Recognizing that COVID-19–associated symptoms and disability may persist for months, clinical trials and additional longitudinal studies are needed to understand the role of outpatient and hospital treatment in 90-day VTE.

https://jamanetwork.com/journals/jamainternalmedicine/fullarticle/2778371

Goldman Sachs Downgrades Acadia Pharmaceuticals (ACAD) to Neutral

'Looking for clarity on forward path from Type A meeting,' target $25.

https://www.streetinsider.com/Analyst+Comments/Goldman+Sachs+Downgrades+Acadia+Pharmaceuticals+%28ACAD%29+to+Neutral%2C+Looking+for+clarity+on+forward+path+from+Type+A+meeting/18223034.html

Phase 1 clinical trial of unique nanoparticle COVID-19 vaccine begins

 A unique vaccine to protect against COVID-19 begins clinical testing Tuesday, 6 April, at the Walter Reed Army Institute of Research (WRAIR), part of the U.S. Army Medical Research and Development Command. Scientists developed a nanoparticle vaccine, based on a ferritin platform, which offers a flexible approach to targeting multiple variants of SARS-COV-2 and potentially other coronaviruses as well.

The , called spike ferritin nanoparticle (SpFN), stands out in the COVID-19 vaccine landscape. Its multi-faced sphere design allows repetitive, ordered presentation of the coronavirus spike protein to the immune system, a strategy that may help provide broader protection.

"Even before recent COVID-19 variants were identified, our team was concerned about the emergence of new coronaviruses in , a threat that has been accelerating in recent years" said Dr. Kayvon Modjarrad, director of the Emerging Infectious Diseases Branch (EIDB) at WRAIR who leads the Army's COVID-19 vaccine research efforts and co-invented the vaccine with WRAIR structural biologist Dr. Gordon Joyce. "That's why we need a vaccine like this: one that has potential to protect broadly and proactively against multiple  species and strains."

Pre-clinical studies indicate that SpFN induces highly potent and broad neutralizing antibody responses against the virus that causes COVID-19 infection, as well as three major SARS-CoV-2 variants and SARS-CoV-1 virus.

The phase 1 study is being conducted at WRAIR's Clinical Trials Center and will enroll 72 healthy adult volunteers ages 18-55. Participants will be randomly placed in placebo or experimental groups.

"This first in human clinical trial of a novel vaccine for SARS-CoV-2 demonstrates the strength of WRAIR's ability to very quickly transition exciting basic science discoveries to the clinic with the promise of developing a public health tool for long-term pandemic control," said Dr. Nelson Michael, director of WRAIR's Center for Infectious Diseases Research. WRAIR is also providing expertise and support to the interagency U.S. federal government response aimed at accelerating the development of other COVID-19 vaccines, therapeutics and diagnostics.

"We are in this for the long haul," said Modjarrad. "We have designed and positioned this platform as the next generation vaccine, one that paves the way for a universal vaccine to protect against not only the current virus, but also counter future variants, stopping them in their tracks before they can cause another pandemic."

https://medicalxpress.com/news/2021-04-phase-clinical-trial-unique-covid-.html